Welcome to ShotgunUnifrac’s documentation!

ShotgunUnifrac is a snakemake pipeline for generating a phylogeny per core gene over a selection of genomes and then combining them together to create a consensus phylogeny. The pipeline is written in snakemake and includes a python library for data curation and prep. View the Quickstart Guide page to see a worked example of installing and using the pipeline.

Indices and tables

• Index

• Module Index

• Search Page